SIMPLE Test Report - proteasome

SIMPLE test run

Execution times

1h 28m 56.9sTotal across 11 timed test steps
Test stepProgramDuration
11_refine3D_autorefine3D_auto45m 22.2s2722.2 seconds
10_abinitio3Dabinitio3D23m 00.1s1380.1 seconds
9_abinitio3D_cavgsabinitio3D_cavgs8m 59.8s539.8 seconds
8_model_cavgs_rejectionmodel_cavgs_rejection2.4s2.4 seconds
7_abinitio2Dabinitio2D4m 42.1s282.1 seconds
6_extractextract5.4s5.4 seconds
5_pickpick1m 04.7s64.7 seconds
4_selectionselection0.1s0.1 seconds
3_ctf_estimatectf_estimate13.3s13.3 seconds
2_motion_correctmotion_correct4m 53.5s293.5 seconds
1_import_moviesimport_movies33.3s33.3 seconds

Total is the sum of execution times recorded by SIMPLE in this test LOG.

11_refine3D_auto45m 22.2s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg
orthogonal_reprojs_state01.jpg orthogonal_reprojs_state01.jpg

LOG summary: PROGRAM refine3D_auto

>>> % SEARCH SPACE SCANNED   AVG/SDEV/MIN/MAX:      100.000        0.000      100.000      100.000
>>> MATCHING  LOW-PASS LIMIT (THIS ITERATION)         3.200
>>> NU HANDOFF LP (NEXT)     AVG/SDEV/MIN/MAX:        3.200        0.000        3.200        3.200
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        3.200        0.000        3.200        3.200
>>> RESOLUTION @ FSC=0.5     AVG/SDEV/MIN/MAX:        3.739        0.000        3.739        3.739
>>> SCORE [0,1]              AVG/SDEV/MIN/MAX:        0.381        0.004        0.372        0.392
>>> -------------------- SETTINGS --------------------
>>> | REFINEMENT MODE               | prob_neigh
>>> | PROB NEIGH MODE               | state
>>> | NSPACE PROJECTION DIRECTIONS  | 20000
>>> | GAU REGULARIZATION            | off
>>> | ML  REGULARIZATION            | on, TAU: 1.00000000
>>> | CONICAL REGULARIZATION        | off
>>> | ICM REGULARIZATION            | off
>>> | AUTOMASKING                   | on, MODE: yes
>>> | FILTER MODE                   | nonuniform
>>> --------------------------------------------------
>>> CONVERGED: yes
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
>>>
>>> RECONSTRUCTION AT ORIGINAL SAMPLING
>>>
>>> FINAL RECONSTRUCTION SAMPLING: box=256 smpd=  1.3000
>>> FINAL RECONSTRUCTION: reusing committed canonical sigmas
>>> # SHARED-MEMORY THREADS USED BY rec3D MASTER PROCESS:      8
>>> RECONSTRUCT3D: 10 PART(S) COMPLETED IN     31.1 s
>>> AUTOMASKING LOW-PASS/DILATION LAYERS/EDGE:   20.00 A/  6 voxels/  6 voxels
>>> FOUND:       1 CONNECTED COMPONENT(S)
>>> FSC MODE: STATE 1, backend=gridding support=sphere posthoc_mask=density phase_randomization=yes
>>> FSC AREA SCORE / CONICAL FSC AREA RATIO (cFAR) STATE  1:   0.7115
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
>>> POSTPROCESS: FSC from fsc_state01.bin, 0.5/0.143 at   3.74/  3.20 A
>>> B-FACTOR (UNFILTERED PAIR) DETERMINED TO:  -105.24
>>> POSTPROCESS: B  -105.24 capped at the cutoff shell: gain  13.06 from shell 104 to Nyquist
>>> POSTPROCESS: ML-regularized map (solve_kind=gridding_regularized), its prior already FSC-weighted it: no FSC weighting
>>> POSTPROCESS: B-sharpened, then Butterworth low-pass at   3.20 A
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:  2722.2 seconds

10_abinitio3D23m 00.1s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg
orientations_distribution_state01_stage04.jpg orientations_distribution_state01_stage04.jpg
orientations_distribution_state01_stage05.jpg orientations_distribution_state01_stage05.jpg
orientations_distribution_state01_stage06.jpg orientations_distribution_state01_stage06.jpg
orientations_distribution_state01_stage07.jpg orientations_distribution_state01_stage07.jpg
orientations_distribution_state01_stage08.jpg orientations_distribution_state01_stage08.jpg
orthogonal_reprojs_state01.jpg orthogonal_reprojs_state01.jpg
orthogonal_reprojs_state01_stage04.jpg orthogonal_reprojs_state01_stage04.jpg
orthogonal_reprojs_state01_stage05.jpg orthogonal_reprojs_state01_stage05.jpg
orthogonal_reprojs_state01_stage06.jpg orthogonal_reprojs_state01_stage06.jpg
orthogonal_reprojs_state01_stage07.jpg orthogonal_reprojs_state01_stage07.jpg
orthogonal_reprojs_state01_stage08.jpg orthogonal_reprojs_state01_stage08.jpg

LOG summary: PROGRAM abinitio3D

Recent FSC=0.143 resolution estimates:
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.547        0.000        5.547        5.547
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.042        0.000        5.042        5.042
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.042        0.000        5.042        5.042
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        5.042        0.000        5.042        5.042
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.622        0.000        4.622        4.622
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.622        0.000        4.622        4.622
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.622        0.000        4.622        4.622
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.160        0.000        4.160        4.160
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.160        0.000        4.160        4.160
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        4.160        0.000        4.160        4.160
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        3.962        0.000        3.962        3.962
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        3.962        0.000        3.962        3.962
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:        3.962        0.000        3.962        3.962

Status:
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_POSTPROCESS NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
**** SIMPLE_CALC_PSPEC_ASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_PSPEC NORMAL STOP ****
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE_BOOTSTRAP_REC3D NORMAL STOP ****
**** SIMPLE_ABINITIO3D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:  1380.1 seconds

9_abinitio3D_cavgs8m 59.8s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg

LOG summary: PROGRAM abinitio3D_cavgs

CLASS:    68 RANK:     3 CORR:   0.76
CLASS:    39 RANK:     4 CORR:   0.76
CLASS:    78 RANK:     5 CORR:   0.76
CLASS:    53 RANK:     6 CORR:   0.75
CLASS:    80 RANK:     7 CORR:   0.75
CLASS:     2 RANK:     8 CORR:   0.75
CLASS:    10 RANK:     9 CORR:   0.75
CLASS:    66 RANK:    10 CORR:   0.74
CLASS:     4 RANK:    11 CORR:   0.74
CLASS:    46 RANK:    12 CORR:   0.74
CLASS:    87 RANK:    13 CORR:   0.74
CLASS:    84 RANK:    14 CORR:   0.74
CLASS:    62 RANK:    15 CORR:   0.73
CLASS:    70 RANK:    16 CORR:   0.73
CLASS:    57 RANK:    17 CORR:   0.73
CLASS:    38 RANK:    18 CORR:   0.73
CLASS:     8 RANK:    19 CORR:   0.72
CLASS:    22 RANK:    20 CORR:   0.68
CLASS:    34 RANK:    21 CORR:   0.68
CLASS:    81 RANK:    22 CORR:   0.67
CLASS:    64 RANK:    23 CORR:   0.65
CLASS:    41 RANK:    24 CORR:   0.65
CLASS:    74 RANK:    25 CORR:   0.61
CLASS:    69 RANK:    26 CORR:   0.59
CLASS:    48 RANK:    27 CORR:   0.58
CLASS:    26 RANK:    28 CORR:   0.56
CLASS:    49 RANK:    29 CORR:   0.52
CLASS:    29 RANK:    30 CORR:   0.51
CLASS:    23 RANK:    31 CORR:   0.50
CLASS:    50 RANK:    32 CORR:   0.50
CLASS:    24 RANK:    33 CORR:   0.50
CLASS:    19 RANK:    34 CORR:   0.48
CLASS:    86 RANK:    35 CORR:   0.47
CLASS:    42 RANK:    36 CORR:   0.46
CLASS:    83 RANK:    37 CORR:   0.46
CLASS:    15 RANK:    38 CORR:   0.46
**** SIMPLE_RANK_CAVGS NORMAL STOP ****
**** SIMPLE_ABINITIO3D_CAVGS NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   539.8 seconds

8_model_cavgs_rejection2.4s

LOG summary: PROGRAM model_cavgs_rejection

 >>> PROGRAM: model_cavgs_rejection
>>> EXECUTION DIRECTORY: 8_model_cavgs_rejection
>>> CAVG QUALITY MODEL          : chunk100mics
>>> CAVG QUALITY MODEL SOURCE   : built-in preset chunk100mics
>>> CAVG QUALITY MODEL CONTEXT  : chunk
>>> CAVG HARD-GATE CONTEXT      : chunk
>>> CAVG HARD-GATE SOURCE       : model artifact
>>> DEFAULT HARD GATES REJECTED:     38
>>> CAVG QUALITY SELECTED / REJECTED :     38 /     52
>>> CAVG QUALITY THRESHOLD RAW / OFFSET / EFFECTIVE :    0.350 /    0.000 /    0.350
>>> CAVG QUALITY SEPARATION / USED THRESHOLD :    0.000 USED=T
>>> WROTE cavgs_quality_features.txt
>>> WROTE quality_selected_cavgs.mrc #CAVGS:     38
>>> WROTE quality_rejected_cavgs.mrc #CAVGS:     52
>>> WROTE hard_gate_rejections.mrc #CAVGS:     38
>>> WROTE quality_ranked_cavgs.mrc #CAVGS:     90
>>> WROTE quality_ranked_cavgs.txt
**** SIMPLE_MODEL_CAVGS_REJECTION NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:     2.4 seconds

7_abinitio2D4m 42.1s

cavgs_iter027.jpg cavgs_iter027.jpg

LOG summary: PROGRAM abinitio2D

Final class ranking and status:
CLASS:    39 RANK:     1 POP:  455 RES:   3.78
CLASS:    62 RANK:     2 POP:  422 RES:   3.92
CLASS:    53 RANK:     3 POP:  349 RES:   3.96
CLASS:    84 RANK:     4 POP:  316 RES:   4.06
CLASS:    66 RANK:     5 POP:  270 RES:   4.11
CLASS:    87 RANK:     6 POP:  341 RES:   4.11
CLASS:    80 RANK:     7 POP:  511 RES:   4.21
CLASS:     4 RANK:     8 POP:  429 RES:   4.21
CLASS:    70 RANK:     9 POP:  318 RES:   4.21
CLASS:     8 RANK:    10 POP:  417 RES:   4.27
CLASS:    38 RANK:    11 POP:  294 RES:   4.38
CLASS:    22 RANK:    12 POP:  232 RES:   5.46
CLASS:     2 RANK:    13 POP:  266 RES:   5.64
CLASS:    68 RANK:    14 POP:  319 RES:   5.84
CLASS:    46 RANK:    15 POP:  248 RES:   5.84
CLASS:    41 RANK:    16 POP:  264 RES:   6.93
CLASS:    81 RANK:    17 POP:  201 RES:   6.93
CLASS:    50 RANK:    18 POP:  153 RES:   7.08
CLASS:    42 RANK:    19 POP:  200 RES:   7.23
CLASS:    15 RANK:    20 POP:  229 RES:   7.40
CLASS:    83 RANK:    21 POP:  150 RES:   7.92
CLASS:    44 RANK:    22 POP:  182 RES:   7.92
CLASS:    13 RANK:    23 POP:  161 RES:   8.53
CLASS:    35 RANK:    24 POP:  135 RES:   8.99
CLASS:    54 RANK:    25 POP:   70 RES:  10.74
CLASS:    78 RANK:    26 POP:  138 RES:  11.89
CLASS:     3 RANK:    27 POP:  103 RES:  13.31
CLASS:    58 RANK:    28 POP:  114 RES:  13.87
CLASS:    48 RANK:    29 POP:  114 RES:  13.87
CLASS:    89 RANK:    30 POP:   22 RES:  13.87
CLASS:     7 RANK:    31 POP:   74 RES:  13.87
CLASS:    86 RANK:    32 POP:  163 RES:  17.52
CLASS:    74 RANK:    33 POP:  121 RES:  17.52
CLASS:    34 RANK:    34 POP:   80 RES:  18.49
CLASS:    29 RANK:    35 POP:  131 RES:  18.49
CLASS:    49 RANK:    36 POP:  136 RES:  18.49
CLASS:    21 RANK:    37 POP:   74 RES:  18.49
CLASS:    71 RANK:    38 POP:   25 RES:  18.49
CLASS:    17 RANK:    39 POP:   74 RES:  18.49
CLASS:    75 RANK:    40 POP:   62 RES:  19.58
CLASS:    31 RANK:    41 POP:   11 RES:  20.80
CLASS:    19 RANK:    42 POP:  173 RES:  20.80
CLASS:    24 RANK:    43 POP:  121 RES:  20.80
CLASS:    79 RANK:    44 POP:   43 RES:  20.80
CLASS:    69 RANK:    45 POP:  116 RES:  20.80
CLASS:    64 RANK:    46 POP:   92 RES:  20.80
CLASS:    30 RANK:    47 POP:   47 RES:  22.19
CLASS:    57 RANK:    48 POP:   42 RES:  22.19
CLASS:    26 RANK:    49 POP:  161 RES:  22.19
CLASS:    12 RANK:    50 POP:  107 RES:  22.19
CLASS:    23 RANK:    51 POP:  141 RES:  22.19
CLASS:    90 RANK:    52 POP:   37 RES:  22.19
CLASS:    45 RANK:    53 POP:   41 RES:  22.19
CLASS:    10 RANK:    54 POP:   49 RES:  22.19
CLASS:    72 RANK:    55 POP:   52 RES:  22.19
CLASS:    65 RANK:    56 POP:   47 RES:  22.19
CLASS:    60 RANK:    57 POP:   54 RES:  23.77
CLASS:    67 RANK:    58 POP:   70 RES:  23.77
CLASS:    37 RANK:    59 POP:   29 RES:  25.60
CLASS:     5 RANK:    60 POP:    7 RES:  27.73
CLASS:    88 RANK:    61 POP:   43 RES:  30.25
CLASS:    77 RANK:    62 POP:   33 RES:  30.25
CLASS:    16 RANK:    63 POP:   44 RES:  30.25
CLASS:    32 RANK:    64 POP:   18 RES:  30.25
CLASS:    51 RANK:    65 POP:   18 RES:  33.28
CLASS:    76 RANK:    66 POP:   26 RES:  33.28
CLASS:    63 RANK:    67 POP:   15 RES:  36.98
CLASS:    59 RANK:    68 POP:   28 RES:  36.98
CLASS:    28 RANK:    69 POP:   24 RES:  36.98
CLASS:     6 RANK:    70 POP:   17 RES:  36.98
CLASS:    25 RANK:    71 POP:   17 RES:  36.98
CLASS:    18 RANK:    72 POP:   20 RES:  36.98
CLASS:     9 RANK:    73 POP:   11 RES:  36.98
CLASS:    56 RANK:    74 POP:    8 RES:  41.60
CLASS:    73 RANK:    75 POP:   14 RES:  41.60
CLASS:    55 RANK:    76 POP:   38 RES:  47.54
CLASS:    85 RANK:    77 POP:    5 RES:  47.54
CLASS:    14 RANK:    78 POP:   49 RES:  55.47
CLASS:    40 RANK:    79 POP:    8 RES:  55.47
CLASS:    36 RANK:    80 POP:    5 RES:  55.47
CLASS:    61 RANK:    81 POP:    9 RES:  66.56
CLASS:     1 RANK:    82 POP:   33 RES:  66.56
CLASS:    27 RANK:    83 POP:   15 RES: 166.40
CLASS:    33 RANK:    84 POP:    4 RES: 166.40
CLASS:    52 RANK:    85 POP:    2 RES: 332.80
CLASS:    11 RANK:    86 POP:    2 RES: 332.80
CLASS:    20 RANK:    87 POP:    3 RES: 332.80

Status:
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_PROB_ALIGN2D NORMAL STOP ****
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_CLUSTER2D NORMAL STOP ****
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_DISTR_MAKE_CAVGS NORMAL STOP ****
**** SIMPLE_RANK_CAVGS NORMAL STOP ****
**** SIMPLE_ABINITIO2D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   282.1 seconds

6_extract5.4s

ptcls_sample.jpg ptcls_sample.jpg
ptcls_sample_lp.jpg ptcls_sample_lp.jpg

LOG summary: PROGRAM extract

100. percent micrographs marker not found; recent extract diagnostics:
>>> EXTRACT: 5 PART(S) COMPLETED IN      4.0 s
**** SIMPLE_EXTRACT_DISTR NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:     5.4 seconds

5_pick1m 04.7s

LOG summary: PROGRAM pick

100. percent micrographs marker not found; recent pick diagnostics:
>>> PICK: 5 PART(S) COMPLETED IN     64.0 s
**** SIMPLE_DISTR_PICK NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    64.7 seconds

4_selection0.1s

LOG summary: PROGRAM selection

Final class ranking and status:

**** SELECTION NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:     0.1 seconds

3_ctf_estimate13.3s

14sep05c_00024sq_00003hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_00024sq_00003hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_00024sq_00003hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_00024sq_00003hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_00024sq_00004hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_00024sq_00004hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_00024sq_00006hl_00003es.frames_ctf_estimate_diag.jpg 14sep05c_00024sq_00006hl_00003es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00002hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00002hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00004hl_00004es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00004hl_00004es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00005hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00005hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00005hl_00003es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00005hl_00003es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00005hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00005hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00006hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00006hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00006hl_00003es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00006hl_00003es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00006hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00006hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00007hl_00004es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00007hl_00004es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00007hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00007hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00008hl_00005es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00008hl_00005es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00009hl_00004es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00009hl_00004es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00010hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00010hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00011hl_00002es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00011hl_00002es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00011hl_00003es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00011hl_00003es.frames_ctf_estimate_diag.jpg
14sep05c_c_00003gr_00014sq_00011hl_00004es.frames_ctf_estimate_diag.jpg 14sep05c_c_00003gr_00014sq_00011hl_00004es.frames_ctf_estimate_diag.jpg

LOG summary: PROGRAM ctf_estimate

100. percent marker not found; recent CTF diagnostics:
>>> CTF_ESTIMATE: 16 PART(S) COMPLETED IN     13.0 s
**** SIMPLE_DISTR_CTF_ESTIMATE NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    13.3 seconds

2_motion_correct4m 53.5s

14sep05c_00024sq_00003hl_00002es.frames_thumb.jpg 14sep05c_00024sq_00003hl_00002es.frames_thumb.jpg
14sep05c_00024sq_00003hl_00005es.frames_thumb.jpg 14sep05c_00024sq_00003hl_00005es.frames_thumb.jpg
14sep05c_00024sq_00004hl_00002es.frames_thumb.jpg 14sep05c_00024sq_00004hl_00002es.frames_thumb.jpg
14sep05c_00024sq_00006hl_00003es.frames_thumb.jpg 14sep05c_00024sq_00006hl_00003es.frames_thumb.jpg
14sep05c_c_00003gr_00014sq_00002hl_00005es.frames_thumb.jpg 14sep05c_c_00003gr_00014sq_00002hl_00005es.frames_thumb.jpg
14sep05c_c_00003gr_00014sq_00004hl_00004es.frames_thumb.jpg 14sep05c_c_00003gr_00014sq_00004hl_00004es.frames_thumb.jpg
14sep05c_c_00003gr_00014sq_00005hl_00002es.frames_thumb.jpg 14sep05c_c_00003gr_00014sq_00005hl_00002es.frames_thumb.jpg
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LOG summary: PROGRAM motion_correct

100. percent marker not found; recent motion-correction diagnostics:
**** SIMPLE_DISTR_MOTION_CORRECT NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   293.5 seconds

1_import_movies33.3s

movthumb1.jpg movthumb1.jpg

LOG summary: PROGRAM import_movies

>>> IMPORTED     20 MOVIE(S)
>>> TOTAL NUMBER OF MOVIE(S):    20
**** IMPORT_MOVIES NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    33.3 seconds