SIMPLE Test Report - motab

SIMPLE test run

Execution times

54m 30.6sTotal across 10 timed test steps
Test stepProgramDuration
10_refine3D_autorefine3D_auto7m 36.1s456.1 seconds
9_abinitio3Dabinitio3D22m 59.9s1379.9 seconds
8_abinitio3D_cavgsabinitio3D_cavgs7m 20.7s440.7 seconds
7_model_cavgs_rejectionmodel_cavgs_rejection1.5s1.5 seconds
6_abinitio2Dabinitio2D3m 53.3s233.3 seconds
5_extractextract5.1s5.1 seconds
4_pickpick1m 37.4s97.4 seconds
3_ctf_estimatectf_estimate34.2s34.2 seconds
2_motion_correctmotion_correct9m 53.3s593.3 seconds
1_import_moviesimport_movies29.1s29.1 seconds

Total is the sum of execution times recorded by SIMPLE in this test LOG.

10_refine3D_auto7m 36.1s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg
orthogonal_reprojs_state01.jpg orthogonal_reprojs_state01.jpg

LOG summary: PROGRAM refine3D_auto

>>> IN-PLANE DIST      (DEG) AVG/SDEV/MIN/MAX:        2.884       13.460        0.000      178.364
>>> SHIFT INCR ARG           AVG/SDEV/MIN/MAX:        0.315        0.296        0.000        6.360
>>> % SEARCH SPACE SCANNED   AVG/SDEV/MIN/MAX:      100.000        0.000      100.000      100.000
>>> MATCHING  LOW-PASS LIMIT (THIS ITERATION)        15.127
>>> NU HANDOFF LP (NEXT)     AVG/SDEV/MIN/MAX:       11.886        0.000       11.886       11.886
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       17.516        0.000       17.516       17.516
>>> RESOLUTION @ FSC=0.5     AVG/SDEV/MIN/MAX:       19.576        0.000       19.576       19.576
>>> SCORE [0,1]              AVG/SDEV/MIN/MAX:        0.457        0.021        0.400        0.555
>>> -------------------- SETTINGS --------------------
>>> | REFINEMENT MODE               | prob_neigh
>>> | PROB NEIGH MODE               | state
>>> | NSPACE PROJECTION DIRECTIONS  | 20000
>>> | GAU REGULARIZATION            | off
>>> | ML  REGULARIZATION            | on, TAU: 1.00000000
>>> | CONICAL REGULARIZATION        | off
>>> | ICM REGULARIZATION            | off
>>> | AUTOMASKING                   | on, MODE: yes
>>> | FILTER MODE                   | nonuniform
>>> --------------------------------------------------
>>> CONVERGED: no
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
>>>
>>> RECONSTRUCTION AT ORIGINAL SAMPLING
>>>
>>> FINAL RECONSTRUCTION SAMPLING: box=256 smpd=  1.3000
>>> FINAL RECONSTRUCTION: reusing committed canonical sigmas
>>> # SHARED-MEMORY THREADS USED BY rec3D MASTER PROCESS:      8
>>> RECONSTRUCT3D: 10 PART(S) COMPLETED IN      4.0 s
>>> AUTOMASKING LOW-PASS/DILATION LAYERS/EDGE:   20.00 A/  6 voxels/  6 voxels
>>> FOUND:       1 CONNECTED COMPONENT(S)
>>> FSC MODE: STATE 1, backend=gridding support=sphere posthoc_mask=density phase_randomization=yes
>>> FSC AREA SCORE / CONICAL FSC AREA RATIO (cFAR) STATE  1:   0.4180
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
>>> POSTPROCESS: FSC from fsc_state01.bin, 0.5/0.143 at  19.58/ 17.52 A
>>> POSTPROCESS: ML-regularized map (solve_kind=gridding_regularized), its prior already FSC-weighted it: no FSC weighting
>>> POSTPROCESS: B-sharpened, then Butterworth low-pass at  17.52 A
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   456.1 seconds

9_abinitio3D22m 59.9s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg
orientations_distribution_state01_stage04.jpg orientations_distribution_state01_stage04.jpg
orientations_distribution_state01_stage05.jpg orientations_distribution_state01_stage05.jpg
orientations_distribution_state01_stage06.jpg orientations_distribution_state01_stage06.jpg
orientations_distribution_state01_stage07.jpg orientations_distribution_state01_stage07.jpg
orientations_distribution_state01_stage08.jpg orientations_distribution_state01_stage08.jpg
orthogonal_reprojs_state01.jpg orthogonal_reprojs_state01.jpg
orthogonal_reprojs_state01_stage04.jpg orthogonal_reprojs_state01_stage04.jpg
orthogonal_reprojs_state01_stage05.jpg orthogonal_reprojs_state01_stage05.jpg
orthogonal_reprojs_state01_stage06.jpg orthogonal_reprojs_state01_stage06.jpg
orthogonal_reprojs_state01_stage07.jpg orthogonal_reprojs_state01_stage07.jpg
orthogonal_reprojs_state01_stage08.jpg orthogonal_reprojs_state01_stage08.jpg

LOG summary: PROGRAM abinitio3D

Recent FSC=0.143 resolution estimates:
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       14.470        0.000       14.470       14.470
>>> RESOLUTION @ FSC=0.143   AVG/SDEV/MIN/MAX:       13.867        0.000       13.867       13.867

Status:
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_POSTPROCESS NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
**** SIMPLE_CALC_PSPEC_ASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_PSPEC NORMAL STOP ****
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE_BOOTSTRAP_REC3D NORMAL STOP ****
**** SIMPLE_ABINITIO3D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:  1379.9 seconds

8_abinitio3D_cavgs7m 20.7s

orientations_distribution_state01.jpg orientations_distribution_state01.jpg

LOG summary: PROGRAM abinitio3D_cavgs

>>> SIGMA2 INIT: reusing committed canonical state
>>>
>>> ITERATION     98
>>>
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_REFINE3D NORMAL STOP ****
>>> BOOTSTRAP_REC3D: EUCLID ML-REGULARIZED RECONSTRUCTION ON RESIDUAL SIGMAS, SIGMA ITERATION 99
>>> FSC MODE: STATE 1, backend=gridding support=sphere posthoc_mask=none phase_randomization=no
>>> FSC AREA SCORE / CONICAL FSC AREA RATIO (cFAR) STATE  1:   0.0180
**** SIMPLE_VOLASSEMBLE NORMAL STOP ****
**** SIMPLE_RECONSTRUCT3D NORMAL STOP ****
**** SIMPLE_BOOTSTRAP_REC3D NORMAL STOP ****
>>>
>>> RE-PROJECTION OF THE FINAL VOLUME
>>>
>>> GENERATING PROJECTIONS
**** SIMPLE_REPROJECT NORMAL STOP ****
>>> SHIFTING IMAGES
CLASS:    24 RANK:     1 CORR:   0.46
CLASS:    34 RANK:     2 CORR:   0.46
CLASS:    23 RANK:     3 CORR:   0.43
CLASS:    61 RANK:     4 CORR:   0.43
CLASS:    63 RANK:     5 CORR:   0.43
CLASS:    87 RANK:     6 CORR:   0.41
CLASS:    60 RANK:     7 CORR:   0.41
CLASS:    58 RANK:     8 CORR:   0.41
CLASS:    45 RANK:     9 CORR:   0.40
CLASS:    76 RANK:    10 CORR:   0.40
CLASS:    26 RANK:    11 CORR:   0.40
CLASS:     6 RANK:    12 CORR:   0.39
CLASS:    73 RANK:    13 CORR:   0.39
CLASS:    15 RANK:    14 CORR:   0.38
CLASS:    75 RANK:    15 CORR:   0.38
CLASS:    89 RANK:    16 CORR:   0.38
CLASS:    10 RANK:    17 CORR:   0.38
CLASS:    25 RANK:    18 CORR:   0.38
**** SIMPLE_RANK_CAVGS NORMAL STOP ****
**** SIMPLE_ABINITIO3D_CAVGS NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   440.7 seconds

7_model_cavgs_rejection1.5s

LOG summary: PROGRAM model_cavgs_rejection

 >>> PROGRAM: model_cavgs_rejection
>>> EXECUTION DIRECTORY: 7_model_cavgs_rejection
>>> CAVG QUALITY MODEL          : chunk100mics
>>> CAVG QUALITY MODEL SOURCE   : built-in preset chunk100mics
>>> CAVG QUALITY MODEL CONTEXT  : chunk
>>> CAVG HARD-GATE CONTEXT      : chunk
>>> CAVG HARD-GATE SOURCE       : model artifact
>>> DEFAULT HARD GATES REJECTED:     67
>>> CAVG QUALITY SELECTED / REJECTED :     18 /     72
>>> CAVG QUALITY THRESHOLD RAW / OFFSET / EFFECTIVE :    0.350 /    0.000 /    0.350
>>> CAVG QUALITY SEPARATION / USED THRESHOLD :    0.000 USED=T
>>> WROTE cavgs_quality_features.txt
>>> WROTE quality_selected_cavgs.mrc #CAVGS:     18
>>> WROTE quality_rejected_cavgs.mrc #CAVGS:     72
>>> WROTE hard_gate_rejections.mrc #CAVGS:     67
>>> WROTE quality_ranked_cavgs.mrc #CAVGS:     90
>>> WROTE quality_ranked_cavgs.txt
**** SIMPLE_MODEL_CAVGS_REJECTION NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:     1.5 seconds

6_abinitio2D3m 53.3s

cavgs_iter027.jpg cavgs_iter027.jpg

LOG summary: PROGRAM abinitio2D

Final class ranking and status:
CLASS:    17 RANK:     1 POP:  309 RES:   9.79
CLASS:    51 RANK:     2 POP:  266 RES:   9.79
CLASS:    37 RANK:     3 POP:  330 RES:  10.08
CLASS:    67 RANK:     4 POP:  276 RES:  11.09
CLASS:    31 RANK:     5 POP:  160 RES:  11.48
CLASS:    10 RANK:     6 POP:  208 RES:  11.89
CLASS:    64 RANK:     7 POP:  181 RES:  12.33
CLASS:    89 RANK:     8 POP:  135 RES:  12.80
CLASS:    15 RANK:     9 POP:  157 RES:  12.80
CLASS:    65 RANK:    10 POP:  245 RES:  14.47
CLASS:    87 RANK:    11 POP:   63 RES:  15.13
CLASS:    32 RANK:    12 POP:   99 RES:  15.13
CLASS:    56 RANK:    13 POP:   68 RES:  16.64
CLASS:    73 RANK:    14 POP:  120 RES:  16.64
CLASS:    28 RANK:    15 POP:   30 RES:  17.52
CLASS:    25 RANK:    16 POP:  115 RES:  17.52
CLASS:    27 RANK:    17 POP:  121 RES:  17.52
CLASS:    75 RANK:    18 POP:  134 RES:  18.49
CLASS:     2 RANK:    19 POP:   34 RES:  18.49
CLASS:     6 RANK:    20 POP:   81 RES:  19.58
CLASS:    48 RANK:    21 POP:   39 RES:  19.58
CLASS:    76 RANK:    22 POP:   71 RES:  19.58
CLASS:    42 RANK:    23 POP:   14 RES:  20.80
CLASS:    58 RANK:    24 POP:   89 RES:  20.80
CLASS:    59 RANK:    25 POP:    8 RES:  20.80
CLASS:    60 RANK:    26 POP:   62 RES:  20.80
CLASS:    62 RANK:    27 POP:   33 RES:  22.19
CLASS:    23 RANK:    28 POP:   64 RES:  22.19
CLASS:    81 RANK:    29 POP:   10 RES:  22.19
CLASS:    63 RANK:    30 POP:   34 RES:  25.60
CLASS:    70 RANK:    31 POP:   29 RES:  25.60
CLASS:     3 RANK:    32 POP:   16 RES:  27.73
CLASS:    61 RANK:    33 POP:   29 RES:  30.25
CLASS:     7 RANK:    34 POP:   57 RES:  30.25
CLASS:    34 RANK:    35 POP:   30 RES:  30.25
CLASS:    57 RANK:    36 POP:   26 RES:  30.25
CLASS:    71 RANK:    37 POP:   10 RES:  30.25
CLASS:    47 RANK:    38 POP:   26 RES:  30.25
CLASS:    11 RANK:    39 POP:   35 RES:  30.25
CLASS:    45 RANK:    40 POP:   62 RES:  30.25
CLASS:    88 RANK:    41 POP:   20 RES:  30.25
CLASS:    85 RANK:    42 POP:   34 RES:  30.25
CLASS:    26 RANK:    43 POP:   40 RES:  33.28
CLASS:    24 RANK:    44 POP:   44 RES:  33.28
CLASS:    46 RANK:    45 POP:   19 RES:  33.28
CLASS:    44 RANK:    46 POP:   83 RES:  33.28
CLASS:    41 RANK:    47 POP:  120 RES:  33.28
CLASS:    36 RANK:    48 POP:  118 RES:  33.28
CLASS:    79 RANK:    49 POP:   12 RES:  41.60
CLASS:    77 RANK:    50 POP:   13 RES:  41.60
CLASS:    38 RANK:    51 POP:   19 RES:  41.60
CLASS:    18 RANK:    52 POP:   66 RES:  41.60
CLASS:    52 RANK:    53 POP:   15 RES:  47.54
CLASS:     5 RANK:    54 POP:   99 RES:  47.54
CLASS:    40 RANK:    55 POP:   14 RES:  47.54
CLASS:     4 RANK:    56 POP:   99 RES:  47.54
CLASS:    35 RANK:    57 POP:   61 RES:  47.54
CLASS:    69 RANK:    58 POP:  109 RES:  47.54
CLASS:    68 RANK:    59 POP:  101 RES:  47.54
CLASS:    33 RANK:    60 POP:   99 RES:  47.54
CLASS:    14 RANK:    61 POP:  118 RES:  55.47
CLASS:    22 RANK:    62 POP:   83 RES:  55.47
CLASS:    20 RANK:    63 POP:   98 RES:  55.47
CLASS:     9 RANK:    64 POP:   72 RES:  55.47
CLASS:    86 RANK:    65 POP:   65 RES:  55.47
CLASS:    29 RANK:    66 POP:   97 RES:  66.56
CLASS:    54 RANK:    67 POP:  106 RES:  66.56
CLASS:    53 RANK:    68 POP:  109 RES:  66.56
CLASS:     1 RANK:    69 POP:   92 RES:  66.56
CLASS:    50 RANK:    70 POP:   19 RES:  66.56
CLASS:    12 RANK:    71 POP:  121 RES:  66.56
CLASS:    43 RANK:    72 POP:   52 RES:  66.56
CLASS:    21 RANK:    73 POP:   36 RES:  66.56
CLASS:    83 RANK:    74 POP:  100 RES:  66.56
CLASS:    72 RANK:    75 POP:    6 RES:  66.56
CLASS:    16 RANK:    76 POP:    9 RES:  66.56
CLASS:    30 RANK:    77 POP:  100 RES:  83.20
CLASS:    13 RANK:    78 POP:   85 RES:  83.20
CLASS:    49 RANK:    79 POP:  105 RES:  83.20
CLASS:    84 RANK:    80 POP:   87 RES:  83.20
CLASS:    82 RANK:    81 POP:  107 RES:  83.20
CLASS:    80 RANK:    82 POP:  128 RES:  83.20
CLASS:    19 RANK:    83 POP:  116 RES:  83.20
CLASS:    74 RANK:    84 POP:   91 RES:  83.20
CLASS:    66 RANK:    85 POP:   96 RES:  83.20
CLASS:     8 RANK:    86 POP:   68 RES:  83.20
CLASS:    90 RANK:    87 POP:  107 RES: 110.93
CLASS:    39 RANK:    88 POP:  124 RES: 110.93
CLASS:    78 RANK:    89 POP:    9 RES: 166.40

Status:
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_PROB_ALIGN2D NORMAL STOP ****
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_CALC_GROUP_SIGMAS NORMAL STOP ****
**** SIMPLE_CLUSTER2D NORMAL STOP ****
**** SIMPLE_CAVGASSEMBLE NORMAL STOP ****
**** SIMPLE_DISTR_MAKE_CAVGS NORMAL STOP ****
**** SIMPLE_RANK_CAVGS NORMAL STOP ****
**** SIMPLE_ABINITIO2D NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   233.3 seconds

5_extract5.1s

ptcls_sample.jpg ptcls_sample.jpg
ptcls_sample_lp.jpg ptcls_sample_lp.jpg

LOG summary: PROGRAM extract

100. percent micrographs marker not found; recent extract diagnostics:
>>> EXTRACT: 5 PART(S) COMPLETED IN      4.0 s
**** SIMPLE_EXTRACT_DISTR NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:     5.1 seconds

4_pick1m 37.4s

LOG summary: PROGRAM pick

100. percent micrographs marker not found; recent pick diagnostics:
>>> PICK: 5 PART(S) COMPLETED IN     97.0 s
**** SIMPLE_DISTR_PICK NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    97.4 seconds

3_ctf_estimate34.2s

FoilHole_10238957_Data_8150947_8150949_20220709_221222_EER_ctf_estimate_diag.jpg FoilHole_10238957_Data_8150947_8150949_20220709_221222_EER_ctf_estimate_diag.jpg
FoilHole_10264455_Data_8150947_8150949_20220710_021825_EER_ctf_estimate_diag.jpg FoilHole_10264455_Data_8150947_8150949_20220710_021825_EER_ctf_estimate_diag.jpg
FoilHole_10264758_Data_8150947_8150949_20220710_033651_EER_ctf_estimate_diag.jpg FoilHole_10264758_Data_8150947_8150949_20220710_033651_EER_ctf_estimate_diag.jpg
FoilHole_10282831_Data_8150944_8150946_20220710_055738_EER_ctf_estimate_diag.jpg FoilHole_10282831_Data_8150944_8150946_20220710_055738_EER_ctf_estimate_diag.jpg
FoilHole_10282841_Data_8150944_8150946_20220710_054032_EER_ctf_estimate_diag.jpg FoilHole_10282841_Data_8150944_8150946_20220710_054032_EER_ctf_estimate_diag.jpg
FoilHole_10283037_Data_8150947_8150949_20220710_064940_EER_ctf_estimate_diag.jpg FoilHole_10283037_Data_8150947_8150949_20220710_064940_EER_ctf_estimate_diag.jpg
FoilHole_10293048_Data_8150947_8150949_20220710_073946_EER_ctf_estimate_diag.jpg FoilHole_10293048_Data_8150947_8150949_20220710_073946_EER_ctf_estimate_diag.jpg
FoilHole_10293155_Data_8150947_8150949_20220710_084001_EER_ctf_estimate_diag.jpg FoilHole_10293155_Data_8150947_8150949_20220710_084001_EER_ctf_estimate_diag.jpg
FoilHole_10293164_Data_8150953_8150955_20220710_091523_EER_ctf_estimate_diag.jpg FoilHole_10293164_Data_8150953_8150955_20220710_091523_EER_ctf_estimate_diag.jpg
FoilHole_10293263_Data_8150950_8150952_20220710_085950_EER_ctf_estimate_diag.jpg FoilHole_10293263_Data_8150950_8150952_20220710_085950_EER_ctf_estimate_diag.jpg
FoilHole_10293269_Data_8150950_8150952_20220710_091242_EER_ctf_estimate_diag.jpg FoilHole_10293269_Data_8150950_8150952_20220710_091242_EER_ctf_estimate_diag.jpg
FoilHole_10293317_Data_8150944_8150946_20220710_092437_EER_ctf_estimate_diag.jpg FoilHole_10293317_Data_8150944_8150946_20220710_092437_EER_ctf_estimate_diag.jpg
FoilHole_10305104_Data_8150944_8150946_20220710_112455_EER_ctf_estimate_diag.jpg FoilHole_10305104_Data_8150944_8150946_20220710_112455_EER_ctf_estimate_diag.jpg
FoilHole_10315973_Data_8150947_8150949_20220710_122419_EER_ctf_estimate_diag.jpg FoilHole_10315973_Data_8150947_8150949_20220710_122419_EER_ctf_estimate_diag.jpg
FoilHole_10315999_Data_8150950_8150952_20220710_121531_EER_ctf_estimate_diag.jpg FoilHole_10315999_Data_8150950_8150952_20220710_121531_EER_ctf_estimate_diag.jpg
FoilHole_10322691_Data_8150950_8150952_20220710_132118_EER_ctf_estimate_diag.jpg FoilHole_10322691_Data_8150950_8150952_20220710_132118_EER_ctf_estimate_diag.jpg
FoilHole_10322728_Data_8150953_8150955_20220710_141628_EER_ctf_estimate_diag.jpg FoilHole_10322728_Data_8150953_8150955_20220710_141628_EER_ctf_estimate_diag.jpg
FoilHole_10322739_Data_8150950_8150952_20220710_133307_EER_ctf_estimate_diag.jpg FoilHole_10322739_Data_8150950_8150952_20220710_133307_EER_ctf_estimate_diag.jpg
FoilHole_10331864_Data_8150950_8150952_20220710_163358_EER_ctf_estimate_diag.jpg FoilHole_10331864_Data_8150950_8150952_20220710_163358_EER_ctf_estimate_diag.jpg
FoilHole_10342065_Data_8150947_8150949_20220710_175930_EER_ctf_estimate_diag.jpg FoilHole_10342065_Data_8150947_8150949_20220710_175930_EER_ctf_estimate_diag.jpg
FoilHole_11313504_Data_8150950_8150952_20220710_215614_EER_ctf_estimate_diag.jpg FoilHole_11313504_Data_8150950_8150952_20220710_215614_EER_ctf_estimate_diag.jpg
FoilHole_11323872_Data_8150944_8150946_20220710_233550_EER_ctf_estimate_diag.jpg FoilHole_11323872_Data_8150944_8150946_20220710_233550_EER_ctf_estimate_diag.jpg
FoilHole_11340858_Data_8150950_8150952_20220711_023320_EER_ctf_estimate_diag.jpg FoilHole_11340858_Data_8150950_8150952_20220711_023320_EER_ctf_estimate_diag.jpg
FoilHole_11359996_Data_8150950_8150952_20220711_072533_EER_ctf_estimate_diag.jpg FoilHole_11359996_Data_8150950_8150952_20220711_072533_EER_ctf_estimate_diag.jpg
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FoilHole_14255736_Data_8150950_8150952_20220713_025115_EER_ctf_estimate_diag.jpg FoilHole_14255736_Data_8150950_8150952_20220713_025115_EER_ctf_estimate_diag.jpg
FoilHole_14255770_Data_8150947_8150949_20220713_030245_EER_ctf_estimate_diag.jpg FoilHole_14255770_Data_8150947_8150949_20220713_030245_EER_ctf_estimate_diag.jpg
FoilHole_14393241_Data_8150953_8150955_20220713_100915_EER_ctf_estimate_diag.jpg FoilHole_14393241_Data_8150953_8150955_20220713_100915_EER_ctf_estimate_diag.jpg
FoilHole_14393847_Data_8150947_8150949_20220713_113602_EER_ctf_estimate_diag.jpg FoilHole_14393847_Data_8150947_8150949_20220713_113602_EER_ctf_estimate_diag.jpg
FoilHole_14402327_Data_8150950_8150952_20220713_115232_EER_ctf_estimate_diag.jpg FoilHole_14402327_Data_8150950_8150952_20220713_115232_EER_ctf_estimate_diag.jpg
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FoilHole_14436859_Data_8150944_8150946_20220713_184542_EER_ctf_estimate_diag.jpg FoilHole_14436859_Data_8150944_8150946_20220713_184542_EER_ctf_estimate_diag.jpg
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FoilHole_9230362_Data_8150953_8150955_20220709_120437_EER_ctf_estimate_diag.jpg FoilHole_9230362_Data_8150953_8150955_20220709_120437_EER_ctf_estimate_diag.jpg
FoilHole_9239927_Data_8150947_8150949_20220709_125842_EER_ctf_estimate_diag.jpg FoilHole_9239927_Data_8150947_8150949_20220709_125842_EER_ctf_estimate_diag.jpg
FoilHole_9240002_Data_8150950_8150952_20220709_135303_EER_ctf_estimate_diag.jpg FoilHole_9240002_Data_8150950_8150952_20220709_135303_EER_ctf_estimate_diag.jpg
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FoilHole_9268774_Data_8150953_8150955_20220709_191445_EER_ctf_estimate_diag.jpg FoilHole_9268774_Data_8150953_8150955_20220709_191445_EER_ctf_estimate_diag.jpg
FoilHole_9268866_Data_8150944_8150946_20220709_185450_EER_ctf_estimate_diag.jpg FoilHole_9268866_Data_8150944_8150946_20220709_185450_EER_ctf_estimate_diag.jpg
FoilHole_9279373_Data_8150947_8150949_20220709_200017_EER_ctf_estimate_diag.jpg FoilHole_9279373_Data_8150947_8150949_20220709_200017_EER_ctf_estimate_diag.jpg
FoilHole_9279429_Data_8150950_8150952_20220709_211206_EER_ctf_estimate_diag.jpg FoilHole_9279429_Data_8150950_8150952_20220709_211206_EER_ctf_estimate_diag.jpg
FoilHole_9279519_Data_8150950_8150952_20220709_213154_EER_ctf_estimate_diag.jpg FoilHole_9279519_Data_8150950_8150952_20220709_213154_EER_ctf_estimate_diag.jpg

LOG summary: PROGRAM ctf_estimate

100. percent marker not found; recent CTF diagnostics:
>>> CTF_ESTIMATE: 5 PART(S) COMPLETED IN     34.0 s
**** SIMPLE_DISTR_CTF_ESTIMATE NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    34.2 seconds

2_motion_correct9m 53.3s

FoilHole_10293155_Data_8150947_8150949_20220710_084001_EER_thumb.jpg FoilHole_10293155_Data_8150947_8150949_20220710_084001_EER_thumb.jpg
FoilHole_10331864_Data_8150950_8150952_20220710_163358_EER_thumb.jpg FoilHole_10331864_Data_8150950_8150952_20220710_163358_EER_thumb.jpg
FoilHole_11396785_Data_8150953_8150955_20220711_135244_EER_thumb.jpg FoilHole_11396785_Data_8150953_8150955_20220711_135244_EER_thumb.jpg
FoilHole_13224396_Data_8150953_8150955_20220712_114729_EER_thumb.jpg FoilHole_13224396_Data_8150953_8150955_20220712_114729_EER_thumb.jpg
FoilHole_14228642_Data_8150944_8150946_20220712_214819_EER_thumb.jpg FoilHole_14228642_Data_8150944_8150946_20220712_214819_EER_thumb.jpg
FoilHole_14246654_Data_8150944_8150946_20220713_005707_EER_thumb.jpg FoilHole_14246654_Data_8150944_8150946_20220713_005707_EER_thumb.jpg
FoilHole_14420288_Data_8150944_8150946_20220713_154616_EER_thumb.jpg FoilHole_14420288_Data_8150944_8150946_20220713_154616_EER_thumb.jpg
FoilHole_15416800_Data_8150950_8150952_20220713_232133_EER_thumb.jpg FoilHole_15416800_Data_8150950_8150952_20220713_232133_EER_thumb.jpg
FoilHole_8153379_Data_8150953_8150955_20220708_161006_EER_thumb.jpg FoilHole_8153379_Data_8150953_8150955_20220708_161006_EER_thumb.jpg
FoilHole_9141750_Data_8150950_8150952_20220708_210122_EER_thumb.jpg FoilHole_9141750_Data_8150950_8150952_20220708_210122_EER_thumb.jpg

LOG summary: PROGRAM motion_correct

100. percent marker not found; recent motion-correction diagnostics:
**** SIMPLE_DISTR_MOTION_CORRECT NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:   593.3 seconds

1_import_movies29.1s

movthumb1.jpg movthumb1.jpg

LOG summary: PROGRAM import_movies

>>> IMPORTED    100 MOVIE(S)
>>> TOTAL NUMBER OF MOVIE(S):   100
**** IMPORT_MOVIES NORMAL STOP ****
**** SIMPLE Git Commit:  3cad71a1
**** Execution time:    29.1 seconds